<?xml version ="1.0" encoding="UTF-8"?>
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<model id="MNMout" name="AMetNetMakerModel">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit kind="mole" scale="-3"/>
<unit kind="gram" exponent="-1"/>
<unit kind="second" multiplier="0.00027777" exponent="-1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="Extra_Cellular" size="5"/>
<compartment id="Cytosol" outside="Extra_Cellular" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="C00001_c" name="H2O_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00002_c" name="ATP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00003_c" name="NAD+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00004_c" name="NADH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00007_c" name="Oxygen_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00011_c" name="CO2_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00013_c" name="Diphosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00017_c" name="Protein_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00020_c" name="AMP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00026_c" name="2-Oxoglutarate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00042_c" name="Succinate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00047_c" name="L-Lysine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00080_c" name="H+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00449_c" name="Saccharopine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01211_c" name="Procollagen 5-hydroxy-L-lysine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01646_c" name="tRNA(Lys)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01672_c" name="Cadaverine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01931_c" name="L-Lysyl-tRNA_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02188_c" name="Protein lysine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C03793_c" name="N6,N6,N6-Trimethyl-L-lysine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C05546_c" name="Protein N6,N6,N6-trimethyl-L-lysine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C06181_c" name="Piperideine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_14_11_4" name="1.14.11.4" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_5_1_7" name="1.5.1.7" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_4_1_1_18" name="4.1.1.18" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_1_1_6" name="6.1.1.6" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_unknown" name="unknown" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_unknown__2" name="unknown" compartment="Cytosol" boundaryCondition="false"/>
</listOfSpecies>
<listOfReactions>
<reaction id = "R03376_c" name = "Protein lysine,2-oxoglutarate:oxygen oxidoreductase(5-hydroxylating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C02188_c" stoichiometry ="1"/>
<speciesReference species="C00026_c" stoichiometry ="1"/>
<speciesReference species="C00007_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C01211_c" stoichiometry ="1"/>
<speciesReference species="C00042_c" stoichiometry ="1"/>
<speciesReference species="C00011_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_14_11_4"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00715_c" name = "N6-(L-1,3-Dicarboxypropyl)-L-lysine:NAD+ oxidoreductase(L-lysine-forming)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00047_c" stoichiometry ="1"/>
<speciesReference species="C00026_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00449_c" stoichiometry ="1"/>
<speciesReference species="C00003_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_5_1_7"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00462_c" name = "L-lysine carboxy-lyase (cadaverine-forming)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00047_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C01672_c" stoichiometry ="1"/>
<speciesReference species="C00011_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_4_1_1_18"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03658_c" name = "L-Lysine:tRNALys ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C00002_c" stoichiometry ="1"/>
<speciesReference species="C00047_c" stoichiometry ="1"/>
<speciesReference species="C01646_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00020_c" stoichiometry ="1"/>
<speciesReference species="C00013_c" stoichiometry ="1"/>
<speciesReference species="C01931_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_6_1_1_6"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03666_c" name = "NO NAME" reversible = "true" > 
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<speciesReference species="C01672_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C06181_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_unknown"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R04313_c" name = "NO NAME" reversible = "true" > 
<listOfReactants>
<speciesReference species="C03793_c" stoichiometry ="1"/>
<speciesReference species="C00017_c" stoichiometry ="2"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C05546_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="2"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_unknown__2"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>
