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<model id="MNMout" name="AMetNetMakerModel">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit kind="mole" scale="-3"/>
<unit kind="gram" exponent="-1"/>
<unit kind="second" multiplier="0.00027777" exponent="-1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="Extra_Cellular" size="5"/>
<compartment id="Cytosol" outside="Extra_Cellular" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="C00001_c" name="H2O_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00002_c" name="ATP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00003_c" name="NAD+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00004_c" name="NADH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00010_c" name="CoA_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00011_c" name="CO2_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00013_c" name="Diphosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00014_c" name="NH3_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00020_c" name="AMP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00037_c" name="Glycine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00065_c" name="L-Serine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00080_c" name="H+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00091_c" name="Succinyl-CoA_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00101_c" name="THF_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00143_c" name="5,10-Methylene-THF_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00430_c" name="5-Aminolevulinate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01242_c" name="S-Aminomethyldihydrolipoylprotein_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01642_c" name="tRNA(Gly)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01650_c" name="tRNA(Ser)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02051_c" name="Lipoylprotein_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02412_c" name="Glycyl-tRNA(Gly)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02553_c" name="L-Seryl-tRNA(Ser)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02972_c" name="Dihydrolipoylprotein_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_4_4_2" name="1.4.4.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_8_1_4" name="1.8.1.4" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_2_1_2_1" name="2.1.2.1" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_2_1_2_10" name="2.1.2.10" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_2_3_1_37" name="2.3.1.37" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_1_1_11" name="6.1.1.11" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_1_1_14" name="6.1.1.14" compartment="Cytosol" boundaryCondition="false"/>
</listOfSpecies>
<listOfReactions>
<reaction id = "R03425_c" name = "glycine:lipoylprotein oxidoreductase (decarboxylating andacceptor-aminomethylating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00037_c" stoichiometry ="1"/>
<speciesReference species="C02051_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C01242_c" stoichiometry ="1"/>
<speciesReference species="C00011_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_4_4_2"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03815_c" name = "dihydrolipoylprotein:NAD+ oxidoreductase" reversible = "true" > 
<listOfReactants>
<speciesReference species="C02972_c" stoichiometry ="1"/>
<speciesReference species="C00003_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C02051_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_8_1_4"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00945_c" name = "5,10-Methylenetetrahydrofolate:glycine hydroxymethyltransferase" reversible = "true" > 
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<speciesReference species="C00143_c" stoichiometry ="1"/>
<speciesReference species="C00037_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00101_c" stoichiometry ="1"/>
<speciesReference species="C00065_c" stoichiometry ="1"/>
</listOfProducts>
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<modifierSpeciesReference species="EC_2_1_2_1"/>
</listOfModifiers>
<kineticLaw>
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<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R04125_c" name = "S-aminomethyldihydrolipoylprotein:(6S)-tetrahydrofolateaminomethyltransferase (ammonia-forming)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C01242_c" stoichiometry ="1"/>
<speciesReference species="C00101_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C02972_c" stoichiometry ="1"/>
<speciesReference species="C00143_c" stoichiometry ="1"/>
<speciesReference species="C00014_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_2_1_2_10"/>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00830_c" name = "succinyl-CoA:glycine C-succinyltransferase (decarboxylating)" reversible = "true" > 
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<speciesReference species="C00091_c" stoichiometry ="1"/>
<speciesReference species="C00037_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00430_c" stoichiometry ="1"/>
<speciesReference species="C00010_c" stoichiometry ="1"/>
<speciesReference species="C00011_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_2_3_1_37"/>
</listOfModifiers>
<kineticLaw>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03662_c" name = "L-Serine:tRNA(Ser) ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C00002_c" stoichiometry ="1"/>
<speciesReference species="C00065_c" stoichiometry ="1"/>
<speciesReference species="C01650_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00020_c" stoichiometry ="1"/>
<speciesReference species="C00013_c" stoichiometry ="1"/>
<speciesReference species="C02553_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_6_1_1_11"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03654_c" name = "Glycine:tRNA(Gly) ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C00002_c" stoichiometry ="1"/>
<speciesReference species="C00037_c" stoichiometry ="1"/>
<speciesReference species="C01642_c" stoichiometry ="1"/>
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<speciesReference species="C00020_c" stoichiometry ="1"/>
<speciesReference species="C00013_c" stoichiometry ="1"/>
<speciesReference species="C02412_c" stoichiometry ="1"/>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
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</listOfParameters>
</kineticLaw>
</reaction>
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