<?xml version ="1.0" encoding="UTF-8"?>
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<model id="MNMout" name="AMetNetMakerModel">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit kind="mole" scale="-3"/>
<unit kind="gram" exponent="-1"/>
<unit kind="second" multiplier="0.00027777" exponent="-1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="Extra_Cellular" size="5"/>
<compartment id="Cytosol" outside="Extra_Cellular" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="C00001_c" name="H2O_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00002_c" name="ATP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00003_c" name="NAD+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00004_c" name="NADH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00008_c" name="ADP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00009_c" name="Orthophosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00011_c" name="CO2_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00013_c" name="Diphosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00014_c" name="NH3_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00020_c" name="AMP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00025_c" name="L-Glutamate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00026_c" name="2-Oxoglutarate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00036_c" name="Oxaloacetate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00049_c" name="L-Aspartate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00064_c" name="L-Glutamine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00080_c" name="H+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00085_c" name="D-Fructose 6-phosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00097_c" name="L-Cysteine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00144_c" name="GMP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00169_c" name="Carbamoyl phosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00288_c" name="HCO3-_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00352_c" name="D-Glucosamine 6-phosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00655_c" name="XMP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00669_c" name="gamma-L-Glutamyl-L-cysteine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01640_c" name="tRNA(Gln)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01641_c" name="tRNA(Glu)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02282_c" name="Glutaminyl-tRNA_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02805_c" name="5-Oxoprolyl-peptide_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02986_c" name="L-Glutaminyl-peptide_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02987_c" name="L-Glutamyl-tRNA(Glu)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C06112_c" name="L-Glutamyl-tRNA(Gln)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_4_1_14" name="1.4.1.14" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_4_1_2" name="1.4.1.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_2_3_2_5" name="2.3.2.5" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_2_6_1_1" name="2.6.1.1" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_2_6_1_16" name="2.6.1.16" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_1_1_17" name="6.1.1.17" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_1_1_18" name="6.1.1.18" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_1_1_24" name="6.1.1.24" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_3_1_2" name="6.3.1.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_3_2_2" name="6.3.2.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_3_4_16" name="6.3.4.16" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_3_5_2" name="6.3.5.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_3_5_5" name="6.3.5.5" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_3_5_7" name="6.3.5.7" compartment="Cytosol" boundaryCondition="false"/>
</listOfSpecies>
<listOfReactions>
<reaction id = "R00093_c" name = "L-glutamate:NAD+ oxidoreductase (transaminating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00025_c" stoichiometry ="2"/>
<speciesReference species="C00003_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00064_c" stoichiometry ="1"/>
<speciesReference species="C00026_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_4_1_14"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00243_c" name = "L-Glutamate:NAD+ oxidoreductase (deaminating)" reversible = "true" > 
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<speciesReference species="C00025_c" stoichiometry ="1"/>
<speciesReference species="C00003_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
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<speciesReference species="C00026_c" stoichiometry ="1"/>
<speciesReference species="C00014_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_4_1_2"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R04058_c" name = "L-Glutaminyl-peptide gamma-gluramyltransferase (cyclizing)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C02986_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C02805_c" stoichiometry ="1"/>
<speciesReference species="C00014_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_2_3_2_5"/>
</listOfModifiers>
<kineticLaw>
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<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00355_c" name = "L-Aspartate:2-oxoglutarate aminotransferase" reversible = "true" > 
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<speciesReference species="C00049_c" stoichiometry ="1"/>
<speciesReference species="C00026_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00036_c" stoichiometry ="1"/>
<speciesReference species="C00025_c" stoichiometry ="1"/>
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<listOfModifiers>
<modifierSpeciesReference species="EC_2_6_1_1"/>
</listOfModifiers>
<kineticLaw>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00768_c" name = "L-glutamine:D-fructose-6-phosphate isomerase (deaminating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00064_c" stoichiometry ="1"/>
<speciesReference species="C00085_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00025_c" stoichiometry ="1"/>
<speciesReference species="C00352_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_2_6_1_16"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R05578_c" name = "L-Glutamate:tRNA(Glu) ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C01641_c" stoichiometry ="1"/>
<speciesReference species="C00025_c" stoichiometry ="1"/>
<speciesReference species="C00002_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C02987_c" stoichiometry ="1"/>
<speciesReference species="C00013_c" stoichiometry ="1"/>
<speciesReference species="C00020_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_6_1_1_17"/>
</listOfModifiers>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03652_c" name = "L-Glutamine:tRNA(Gln) ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C00002_c" stoichiometry ="1"/>
<speciesReference species="C00064_c" stoichiometry ="1"/>
<speciesReference species="C01640_c" stoichiometry ="1"/>
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<listOfProducts>
<speciesReference species="C00020_c" stoichiometry ="1"/>
<speciesReference species="C00013_c" stoichiometry ="1"/>
<speciesReference species="C02282_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_6_1_1_18"/>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03651_c" name = "L-Glutamate:tRNA(Gln) ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C01640_c" stoichiometry ="1"/>
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<listOfProducts>
<speciesReference species="C00020_c" stoichiometry ="1"/>
<speciesReference species="C00013_c" stoichiometry ="1"/>
<speciesReference species="C06112_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_6_1_1_24"/>
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<kineticLaw>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00253_c" name = "L-Glutamate:ammonia ligase (ADP-forming)" reversible = "true" > 
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<speciesReference species="C00014_c" stoichiometry ="1"/>
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<speciesReference species="C00008_c" stoichiometry ="1"/>
<speciesReference species="C00009_c" stoichiometry ="1"/>
<speciesReference species="C00064_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_6_3_1_2"/>
</listOfModifiers>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00894_c" name = "L-glutamate:L-cysteine gamma-ligase (ADP-forming)" reversible = "true" > 
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<speciesReference species="C00097_c" stoichiometry ="1"/>
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<speciesReference species="C00009_c" stoichiometry ="1"/>
<speciesReference species="C00669_c" stoichiometry ="1"/>
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<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00149_c" name = "Carbon-dioxide:ammonia ligase(ADP-forming,carbamate-phosphorylating)" reversible = "true" > 
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<speciesReference species="C00014_c" stoichiometry ="1"/>
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<speciesReference species="C00169_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_6_3_4_16"/>
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<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
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</reaction>
<reaction id = "R01231_c" name = "Xanthosine-5'-phosphate:L-glutamine amido-ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C00064_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_6_3_5_2"/>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
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<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00575_c" name = "hydrogen-carbonate:L-glutamine amido-ligase (ADP-forming,carbamate-phosphorylating)" reversible = "true" > 
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<speciesReference species="C00288_c" stoichiometry ="1"/>
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<speciesReference species="C00025_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_6_3_5_5"/>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
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<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
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</reaction>
<reaction id = "R03905_c" name = "Glu-tRNA(Gln):L-glutamine amido-ligase(ADP-forming)" reversible = "true" > 
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<speciesReference species="C00009_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_6_3_5_7"/>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
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</listOfParameters>
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</reaction>
</listOfReactions>
</model>
</sbml>
