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<model id="MNMout" name="AMetNetMakerModel">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit kind="mole" scale="-3"/>
<unit kind="gram" exponent="-1"/>
<unit kind="second" multiplier="0.00027777" exponent="-1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="Extra_Cellular" size="5"/>
<compartment id="Cytosol" outside="Extra_Cellular" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="C00001_c" name="H2O_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00002_c" name="ATP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00003_c" name="NAD+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00004_c" name="NADH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00005_c" name="NADPH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00006_c" name="NADP+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00007_c" name="Oxygen_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00011_c" name="CO2_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00013_c" name="Diphosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00020_c" name="AMP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00025_c" name="L-Glutamate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00026_c" name="2-Oxoglutarate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00042_c" name="Succinate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00062_c" name="L-Arginine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00077_c" name="L-Ornithine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00080_c" name="H+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00086_c" name="Urea_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00148_c" name="L-Proline_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01157_c" name="trans-4-Hydroxy-L-proline_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01165_c" name="L-Glutamate 5-semialdehyde_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01636_c" name="tRNA(Arg)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01649_c" name="tRNA(Pro)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02163_c" name="L-Arginyl-tRNA(Arg)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C02702_c" name="L-Prolyl-tRNA(Pro)_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C03912_c" name="(S)-1-Pyrroline-5-carboxylate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_14_11_2" name="1.14.11.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_5_1_2" name="1.5.1.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_5_1_2__2" name="1.5.1.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_2_6_1_13" name="2.6.1.13" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_3_5_3_1" name="3.5.3.1" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_1_1_15" name="6.1.1.15" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_1_1_19" name="6.1.1.19" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_unknown" name="unknown" compartment="Cytosol" boundaryCondition="false"/>
</listOfSpecies>
<listOfReactions>
<reaction id = "R01252_c" name = "L-Proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00148_c" stoichiometry ="1"/>
<speciesReference species="C00026_c" stoichiometry ="1"/>
<speciesReference species="C00007_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C01157_c" stoichiometry ="1"/>
<speciesReference species="C00042_c" stoichiometry ="1"/>
<speciesReference species="C00011_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_14_11_2"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R01248_c" name = "L-Proline:NAD+ 5-oxidoreductase" reversible = "true" > 
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<speciesReference species="C00148_c" stoichiometry ="1"/>
<speciesReference species="C00003_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C03912_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_5_1_2"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R01251_c" name = "L-Proline:NADP+ 5-oxidoreductase" reversible = "true" > 
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<speciesReference species="C00148_c" stoichiometry ="1"/>
<speciesReference species="C00006_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C03912_c" stoichiometry ="1"/>
<speciesReference species="C00005_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_1_5_1_2__2"/>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00667_c" name = "L-Ornithine:2-oxo-acid aminotransferase" reversible = "true" > 
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<speciesReference species="C00077_c" stoichiometry ="1"/>
<speciesReference species="C00026_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C01165_c" stoichiometry ="1"/>
<speciesReference species="C00025_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_2_6_1_13"/>
</listOfModifiers>
<kineticLaw>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00551_c" name = "L-Arginine amidinohydrolase" reversible = "true" > 
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<speciesReference species="C00062_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00077_c" stoichiometry ="1"/>
<speciesReference species="C00086_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_3_5_3_1"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03661_c" name = "L-Proline:tRNA(Pro) ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C00002_c" stoichiometry ="1"/>
<speciesReference species="C00148_c" stoichiometry ="1"/>
<speciesReference species="C01649_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00020_c" stoichiometry ="1"/>
<speciesReference species="C00013_c" stoichiometry ="1"/>
<speciesReference species="C02702_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_6_1_1_15"/>
</listOfModifiers>
<kineticLaw>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R03646_c" name = "L-Arginine:tRNA(Arg) ligase (AMP-forming)" reversible = "true" > 
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<speciesReference species="C00002_c" stoichiometry ="1"/>
<speciesReference species="C00062_c" stoichiometry ="1"/>
<speciesReference species="C01636_c" stoichiometry ="1"/>
</listOfReactants>
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<speciesReference species="C00020_c" stoichiometry ="1"/>
<speciesReference species="C00013_c" stoichiometry ="1"/>
<speciesReference species="C02163_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_6_1_1_19"/>
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<kineticLaw>
<listOfParameters>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
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</reaction>
<reaction id = "R03314_c" name = "NO NAME" reversible = "true" > 
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<speciesReference species="C01165_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C03912_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_unknown"/>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
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</listOfParameters>
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