<?xml version ="1.0" encoding="UTF-8"?>
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<model id="MNMout" name="AMetNetMakerModel">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit kind="mole" scale="-3"/>
<unit kind="gram" exponent="-1"/>
<unit kind="second" multiplier="0.00027777" exponent="-1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="Extra_Cellular" size="5"/>
<compartment id="Cytosol" outside="Extra_Cellular" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="C00001_c" name="H2O_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00002_c" name="ATP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00003_c" name="NAD+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00004_c" name="NADH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00005_c" name="NADPH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00006_c" name="NADP+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00008_c" name="ADP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00009_c" name="Orthophosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00011_c" name="CO2_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00014_c" name="NH3_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00025_c" name="L-Glutamate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00026_c" name="2-Oxoglutarate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00064_c" name="L-Glutamine_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00080_c" name="H+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00088_c" name="Nitrite_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00169_c" name="Carbamoyl phosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00244_c" name="Nitrate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01358_c" name="NH4OH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_4_1_2" name="1.4.1.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_4_1_4" name="1.4.1.4" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_7_1_1" name="1.7.1.1" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_7_1_3" name="1.7.1.3" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_7_1_4" name="1.7.1.4" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_7_1_4__2" name="1.7.1.4" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_3_1_2" name="6.3.1.2" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_6_3_4_16" name="6.3.4.16" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_unknown" name="unknown" compartment="Cytosol" boundaryCondition="false"/>
</listOfSpecies>
<listOfReactions>
<reaction id = "R00243_c" name = "L-Glutamate:NAD+ oxidoreductase (deaminating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00025_c" stoichiometry ="1"/>
<speciesReference species="C00003_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00026_c" stoichiometry ="1"/>
<speciesReference species="C00014_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_4_1_2"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00248_c" name = "L-Glutamate:NADP+ oxidoreductase (deaminating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00025_c" stoichiometry ="1"/>
<speciesReference species="C00006_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00026_c" stoichiometry ="1"/>
<speciesReference species="C00014_c" stoichiometry ="1"/>
<speciesReference species="C00005_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_4_1_4"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00794_c" name = "nitrite:NAD+ oxidoreductase;" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00088_c" stoichiometry ="1"/>
<speciesReference species="C00003_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00244_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_7_1_1"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00796_c" name = "nitrite:NADP+ oxidoreductase;" reversible = "true" > 
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<speciesReference species="C00088_c" stoichiometry ="1"/>
<speciesReference species="C00006_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00244_c" stoichiometry ="1"/>
<speciesReference species="C00005_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_7_1_3"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00787_c" name = "ammonium-hydroxide:NADP+ oxidoreductase" reversible = "true" > 
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<speciesReference species="C01358_c" stoichiometry ="1"/>
<speciesReference species="C00003_c" stoichiometry ="3"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00088_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="3"/>
<speciesReference species="C00080_c" stoichiometry ="3"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_7_1_4"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00789_c" name = "ammonium-hydroxide:NAD(P)+ oxidoreductase" reversible = "true" > 
<listOfReactants>
<speciesReference species="C01358_c" stoichiometry ="1"/>
<speciesReference species="C00006_c" stoichiometry ="3"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00088_c" stoichiometry ="1"/>
<speciesReference species="C00005_c" stoichiometry ="3"/>
<speciesReference species="C00080_c" stoichiometry ="3"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_7_1_4__2"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00253_c" name = "L-Glutamate:ammonia ligase (ADP-forming)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00002_c" stoichiometry ="1"/>
<speciesReference species="C00025_c" stoichiometry ="1"/>
<speciesReference species="C00014_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00008_c" stoichiometry ="1"/>
<speciesReference species="C00009_c" stoichiometry ="1"/>
<speciesReference species="C00064_c" stoichiometry ="1"/>
</listOfProducts>
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<modifierSpeciesReference species="EC_6_3_1_2"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00149_c" name = "Carbon-dioxide:ammonia ligase(ADP-forming,carbamate-phosphorylating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00002_c" stoichiometry ="2"/>
<speciesReference species="C00014_c" stoichiometry ="1"/>
<speciesReference species="C00011_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00008_c" stoichiometry ="2"/>
<speciesReference species="C00009_c" stoichiometry ="1"/>
<speciesReference species="C00169_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_6_3_4_16"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "NH4OH_dis_c" name = "Ammonium Hydroxide Dissociation" reversible = "true" > 
<listOfReactants>
<speciesReference species="C01358_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00014_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_unknown"/>
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<kineticLaw>
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<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
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