<?xml version ="1.0" encoding="UTF-8"?>
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<model id="MNMout" name="AMetNetMakerModel">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit kind="mole" scale="-3"/>
<unit kind="gram" exponent="-1"/>
<unit kind="second" multiplier="0.00027777" exponent="-1"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment id="Extra_Cellular" size="5"/>
<compartment id="Cytosol" outside="Extra_Cellular" size="1"/>
<compartment id="Mitochondria" outside="Extra_Cellular" size="1"/>
</listOfCompartments>
<listOfSpecies>
<species id="C00001_c" name="H2O_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00002_c" name="ATP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00003_c" name="NAD+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00004_c" name="NADH_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00008_c" name="ADP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00009_c" name="Orthophosphate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00011_c" name="CO2_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00025_c" name="L-Glutamate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00026_c" name="2-Oxoglutarate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00036_c" name="Oxaloacetate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00036_m" name="Oxaloacetate_m" compartment="Mitochondria" boundaryCondition="false"/>
<species id="C00049_c" name="L-Aspartate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00074_c" name="PEP_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00080_c" name="H+_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C00149_c" name="(S)-Malate_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="C01353_c" name="Carbonic acid_c" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_1_1_1_37" name="1.1.1.37" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_2_6_1_1" name="2.6.1.1" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_4_1_1_31" name="4.1.1.31" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_4_1_1_49" name="4.1.1.49" compartment="Cytosol" boundaryCondition="false"/>
<species id="EC_4_2_1_1" name="4.2.1.1" compartment="Cytosol" boundaryCondition="false"/>
</listOfSpecies>
<listOfReactions>
<reaction id = "R00342_c" name = "(S)-malate:NAD+ oxidoreductase" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00036_c" stoichiometry ="1"/>
<speciesReference species="C00004_c" stoichiometry ="1"/>
<speciesReference species="C00080_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00149_c" stoichiometry ="1"/>
<speciesReference species="C00003_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_1_1_1_37"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00355_c" name = "L-Aspartate:2-oxoglutarate aminotransferase" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00049_c" stoichiometry ="1"/>
<speciesReference species="C00026_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00036_c" stoichiometry ="1"/>
<speciesReference species="C00025_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_2_6_1_1"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00345_c" name = "Orthophosphate:oxaloacetate carboxyl-lyase (phosphorylating)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00009_c" stoichiometry ="1"/>
<speciesReference species="C00036_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00001_c" stoichiometry ="1"/>
<speciesReference species="C00074_c" stoichiometry ="1"/>
<speciesReference species="C00011_c" stoichiometry ="1"/>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference species="EC_4_1_1_31"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00341_c" name = "ATP:oxaloacetate carboxy-lyase(transphosphorylating;phosphoenolpyruvate-forming)" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00002_c" stoichiometry ="1"/>
<speciesReference species="C00036_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00008_c" stoichiometry ="1"/>
<speciesReference species="C00074_c" stoichiometry ="1"/>
<speciesReference species="C00011_c" stoichiometry ="1"/>
</listOfProducts>
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<modifierSpeciesReference species="EC_4_1_1_49"/>
</listOfModifiers>
<kineticLaw>
<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "R00132_c" name = "carbonic acid hydro-lyase" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00011_c" stoichiometry ="1"/>
<speciesReference species="C00001_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C01353_c" stoichiometry ="1"/>
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<modifierSpeciesReference species="EC_4_2_1_1"/>
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<listOfParameters>
<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
<reaction id = "Oxaloacetate_ctom_s" name = "Oxaloacetate transfer: cytosol to mitochondria" reversible = "true" > 
<listOfReactants>
<speciesReference species="C00036_c" stoichiometry ="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="C00036_m" stoichiometry ="1"/>
</listOfProducts>
<kineticLaw>
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<parameter id="LOWER_BOUND" value="-500" units="mmol_per_gDW_per_hr"/>
<parameter id="UPPER_BOUND" value="500" units="mmol_per_gDW_per_hr"/>
<parameter id="OBJECTIVE_COEFFICIENT" value="0"/>
<parameter id="FLUX_VALUE" value="0" units="mmol_per_gDW_per_hr"/>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
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